Course links

Databases:

NCBI http://www.ncbi.nlm.nih.gov/

EMBL http://www.ebi.ac.uk/embl/

DDBJ http://www.ddbj.nig.ac.jp/

PDB (RCSB) http://www.rcsb.org/pdb/Welcome.do

PIR http://pir.georgetown.edu/

SWISSPROT http://www.ebi.ac.uk/swissprot/

PRF http://www.prf.or.jp/en/

MMDB http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml

VAST http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml

KEGG http://www.genome.jp/kegg/

SCOP http://scop.mrc-lmb.cam.ac.uk/scop/

CATH http://cathwww.biochem.ucl.ac.uk/latest/index.html

TIGR http://www.tigr.org/

MGI http://www.informatics.jax.org/

FLYBASE http://flybase.bio.indiana.edu/

Saccharomyces Genome Database http://www.yeastgenome.org/

GtRDB http://lowelab.ucsc.edu/GtRNAdb/

University of Houston Libraries http://info.lib.uh.edu/index.html
Mitochondria Database http://evogen.jgi.doe.gov/cgi-bin/MGA_Browser_Mt.cgi

Programs:

Alignments
BioEdit http://www.mbio.ncsu.edu/BioEdit/bioedit.html

LALIGN http://www.ch.embnet.org/software/LALIGN_form.html

Dotlet http://www.isrec.isb-sib.ch/java/dotlet/Dotlet.html

Anchored multiple alignment DALIGN http://dialign.gobics.de/anchor/submission.php

TCoffee http://igs-server.cnrs-mrs.fr/Tcoffee/tcoffee_cgi/index.cgi

ClustalW http://www.ebi.ac.uk/clustalw/

Distmat http://emboss.cbr.nrc.ca/cgi-bin/emboss/distmat

Format Conversions

Alignment Format Conversion http://www.ii.uib.no/~matthewb/tools/align_convert_in.cgi

PAL2NAL http://coot.embl.de/pal2nal/

TranSeq http://www.ebi.ac.uk/emboss/transeq/

READSEQ Sequence Conversion http://thr.cit.nih.gov/molbio/readseq/

Reverse complement of a sequence http://searchlauncher.bcm.tmc.edu/seq-util/Options/revcomp.html

Sequence Search

Blast http://www.ncbi.nlm.nih.gov/BLAST/

FASTA http://fasta.bioch.virginia.edu/

Selection

Ka/Ks Calculation tool http://www.bioinfo.no/tools/kaks

Selection Server http://selecton.bioinfo.tau.ac.il/

SNAP http://hcv.lanl.gov/content/hcv-db/SNAP/SNAP.html

Trees

TreeView http://taxonomy.zoology.gla.ac.uk/rod/treeview.html

FindModel http://hcv.lanl.gov/content/hcv-db/findmodel/findmodel.html

Structure

MFold http://www.bioinfo.rpi.edu/applications/mfold/rna/form1.cgi

RNA secondary structure prediction server http://www.genebee.msu.su/services/rna2_reduced.html

ExPASy http://www.expasy.org/

Protein Explorer http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/frntdoor.htm

Cn3D http://130.14.29.110/Structure/CN3D/cn3d.shtml

DSSP http://bioweb.pasteur.fr/seqanal/interfaces/dssp-simple.html

ESyPred3D http://www.fundp.ac.be/sciences/biologie/urbm/bioinfo/esypred/

Multiple Protein Structure Alignment Server http://bioinformatics.albany.edu/~cemc/

Education:

Bioinformatics:

http://www.geocities.com/bioinformaticsweb/glossary.html

http://big.mcw.edu/

Genetics:

http://www.geocities.com/bioinformaticsweb/genomicglossary.html

Molecular Evolution:

http://workshop.molecularevolution.org/resources/glossary/

Biology dictionary:

http://www.biology-online.org/dictionary/satellite_cells

The Bioinformatics Resource Page:

http://www.1sthealthinsurancequotes.com/bioinformatics.html