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   DNA sequence analysis

NCBI - BLAST 

PatScan

Repeat Finder

WU - BLAST

AliBee

 

   Motif Searching

Prosite

MAST

SMART

e-MOTIF

PRINTS

 

   DNA Primer Design

PDA - primer design assistant

  

   Gene Synthesis

Gene2Oligo - oligonucleotide design for in vitro gene synthesis

 

   microRNA

miRBase

miRecords

PicTar

Rfam

 

   RNA Secondary Structure Prediction

The Zuker Group

GPRM

GeneBee

RNAsoft

RNAz

SLASH

SStructView

SSU

Vienna RNA package

X-RNA

 

   RNAi Design                                                                                                                                                           TOP

RNAi Designer

DEQOR

Dharmacon

siRNA target finder

BLOCK-iT

siRNA sequence finder

QIAGEN's RNAi

IDT SciTools RNAi design

RNAi oligoRetriever

siRNA finder

WI siRNA selection program

 

   Microarray analysis

ArrayXPath

CONFAC

DAMA

GEPAS

MAP

 

   Protein Sequence Analysis

  

   Protein Interactions Predictions                                                                                                                          TOP

Predictome

ADVICE

Interaction Prediction

InterPreTS

InterDom

POINT

STRING

E. coli predicted protein interactions database

 

   Secondary Structure Prediction

PRED

NPS@

Pred2ary

PredictProtein

YASPIN

PSA

 

   Subcellular Localization Prediction

CELLO

couple-subloc

PreDotar

ProSLP

psort

Proteome Analyst Specialized Subcellular Localization Server

 

   3D Structure Modeling                                                                                                                                      TOP

MODELLER

SAM

SDSC

  

   3D Structure Comparison

Databases and Tools for 3-D Protein Structure Comparison and Alignment

DALI

VAST

  

   Own Webtool

PepArray pro

miRFocus

 

Source : http://bbsc.imb.sinica.edu.tw/online_tools/online_tools.php

 

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